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163
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IPPS
2009
IEEE
2009
IEEE
Scaling communication-intensive applications on BlueGene/P using one-sided communication and overlap
16 years 1 months ago
In earlier work, we showed that the one-sided communication model found in PGAS languages (such as UPC) offers significant advantages in communication efficiency by decoupling d...
181
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IPPS
2009
IEEE
16 years 1 months ago
2009
IEEE
Abstract—Recent years have seen a trend in using graphic processing units (GPU) as accelerators for general-purpose computing. The inexpensive, single-chip, massively parallel ar...
176
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IPPS
2009
IEEE
16 years 1 months ago
2009
IEEE
Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...
178
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WABI
2009
Springer
16 years 1 months ago
2009
Springer
Abstract. The existing synteny block reconstruction algorithms use anchors (e.g., orthologous genes) shared over all genomes to construct the synteny blocks for multiple genomes. T...
204
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WWIC
2009
Springer
16 years 1 months ago
2009
Springer
Abstract. To interconnect a wireless sensor network (WSN) to the Internet, we propose to use TCP/IP as the standard protocol for all network entities. We present a cross layer desi...