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ICSM
2007
IEEE
16 years 19 days ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
BMCBI
2010
196views more  BMCBI 2010»
15 years 3 months ago
Content-based microarray search using differential expression profiles
Background: With the expansion of public repositories such as the Gene Expression Omnibus (GEO), we are rapidly cataloging cellular transcriptional responses to diverse experiment...
Jesse M. Engreitz, Alexander A. Morgan, Joel Dudle...
IICS
2010
Springer
15 years 10 months ago
An Evaluation Framework for Semantic Search in P2P Networks
: We address the problem of evaluating peer-to-peer information retrieval (P2PIR) systems with semantic overlay structure. The P2PIR community lacks a commonly accepted testbed, su...
Florian Holz, Hans Friedrich Witschel, Gregor Hein...
GIS
2002
ACM
15 years 6 months ago
A road network embedding technique for k-nearest neighbor search in moving object databases
A very important class of queries in GIS applications is the class of K-Nearest Neighbor queries. Most of the current studies on the K-Nearest Neighbor queries utilize spatial ind...
Cyrus Shahabi, Mohammad R. Kolahdouzan, Mehdi Shar...
RECOMB
2006
Springer
16 years 6 months ago
A Parsimony Approach to Genome-Wide Ortholog Assignment
The assignment of orthologous genes between a pair of genomes is a fundamental and challenging problem in comparative genomics, since many computational methods for solving various...
Zheng Fu, Xin Chen, Vladimir Vacic, Peng Nan, Yang...