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SAC
2005
ACM
16 years 6 days ago
Graphical rule-based representation of signal-transduction networks
The process by which a cell senses and responds to its environment, as in signal transduction, is often mediated by a network of protein-protein interactions, in which proteins co...
James R. Faeder, Michael L. Blinov, William S. Hla...
CIKM
2005
Springer
16 years 5 days ago
Internet scale string attribute publish/subscribe data networks
With this work we aim to make a three-fold contribution. We first address the issue of supporting efficiently queries over string-attributes involving prefix, suffix, containmen...
Ioannis Aekaterinidis, Peter Triantafillou
SIGMOD
2010
ACM
223views Database» more  SIGMOD 2010»
15 years 11 months ago
Finding maximal cliques in massive networks by H*-graph
Maximal clique enumeration (MCE) is a fundamental problem in graph theory and has important applications in many areas such as social network analysis and bioinformatics. The prob...
James Cheng, Yiping Ke, Ada Wai-Chee Fu, Jeffrey X...
BMCBI
2008
153views more  BMCBI 2008»
15 years 6 months ago
Estimating the size of the solution space of metabolic networks
Background: Cellular metabolism is one of the most investigated system of biological interactions. While the topological nature of individual reactions and pathways in the network...
Alfredo Braunstein, Roberto Mulet, Andrea Pagnani
BMCBI
2010
83views more  BMCBI 2010»
15 years 6 months ago
Trees on networks: resolving statistical patterns of phylogenetic similarities among interacting proteins
Background: Phylogenies capture the evolutionary ancestry linking extant species. Correlations and similarities among a set of species are mediated by and need to be understood in...
William P. Kelly, Michael P. H. Stumpf