The process by which a cell senses and responds to its environment, as in signal transduction, is often mediated by a network of protein-protein interactions, in which proteins co...
James R. Faeder, Michael L. Blinov, William S. Hla...
With this work we aim to make a three-fold contribution. We first address the issue of supporting efficiently queries over string-attributes involving prefix, suffix, containmen...
Maximal clique enumeration (MCE) is a fundamental problem in graph theory and has important applications in many areas such as social network analysis and bioinformatics. The prob...
James Cheng, Yiping Ke, Ada Wai-Chee Fu, Jeffrey X...
Background: Cellular metabolism is one of the most investigated system of biological interactions. While the topological nature of individual reactions and pathways in the network...
Background: Phylogenies capture the evolutionary ancestry linking extant species. Correlations and similarities among a set of species are mediated by and need to be understood in...