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BIOCOMP
2007
15 years 8 months ago
Quality-Based Similarity Search for Biological Sequence Databases
Low-Complexity Regions (LCRs) of biological sequences are the main source of false positives in similarity searches for biological sequence databases. We consider the problem of ï...
Xuehui Li, Tamer Kahveci
LWA
2004
15 years 8 months ago
Efficient Frequent Pattern Mining in Relational Databases
Data mining on large relational databases has gained popularity and its significance is well recognized. However, the performance of SQL based data mining is known to fall behind ...
Xuequn Shang, Kai-Uwe Sattler, Ingolf Geist
DKE
2006
109views more  DKE 2006»
15 years 7 months ago
Xandy: A scalable change detection technique for ordered XML documents using relational databases
Previous work in change detection to XML documents is not suitable for detecting the changes to large XML documents as it requires a lot of memory to keep the two versions of XML ...
Erwin Leonardi, Sourav S. Bhowmick
NAR
2006
91views more  NAR 2006»
15 years 7 months ago
YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms
We present YOGY a web-based resource for orthologous proteins from nine eukaryotic organisms: Homo sapiens, Mus musculus, Rattus norvegicus, Arabidopsis thaliana, Drosophila melan...
Christopher J. Penkett, James A. Morris, Valerie W...
BMCBI
2005
150views more  BMCBI 2005»
15 years 7 months ago
Approaching the taxonomic affiliation of unidentified sequences in public databases - an example from the mycorrhizal fungi
Background: During the last few years, DNA sequence analysis has become one of the primary means of taxonomic identification of species, particularly so for species that are minut...
R. Henrik Nilsson, Erik Kristiansson, Martin Ryber...