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RECOMB
2005
Springer
16 years 6 months ago
The Factor Graph Network Model for Biological Systems
Abstract. We introduce an extended computational framework for studying biological systems. Our approach combines formalization of existing qualitative models that are in wide but ...
Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Sh...
RECOMB
2005
Springer
16 years 6 months ago
Predicting Protein-Peptide Binding Affinity by Learning Peptide-Peptide Distance Functions
Many important cellular response mechanisms are activated when a peptide binds to an appropriate receptor. In the immune system, the recognition of pathogen peptides begins when th...
Chen Yanover, Tomer Hertz
RECOMB
2004
Springer
16 years 6 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
CADE
2005
Springer
16 years 6 months ago
Reflecting Proofs in First-Order Logic with Equality
Our general goal is to provide better automation in interactive proof assistants such as Coq. We present an interpreter of proof traces in first-order multi-sorted logic with equal...
Evelyne Contejean, Pierre Corbineau
OSDI
2008
ACM
16 years 6 months ago
Automating Network Application Dependency Discovery: Experiences, Limitations, and New Solutions
Abstract ? Large enterprise networks consist of thousands of services and applications. The performance and reliability of any particular application may depend on multiple service...
Xu Chen, Ming Zhang, Zhuoqing Morley Mao, Paramvir...
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