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BMCBI
2004
126views more  BMCBI 2004»
15 years 6 months ago
A probabilistic model for the evolution of RNA structure
Background: For the purposes of finding and aligning noncoding RNA gene- and cis-regulatory elements in multiple-genome datasets, it is useful to be able to derive multi-sequence ...
Ian Holmes
SG
2009
Springer
16 years 1 months ago
Towards the Big Picture: Enriching 3D Models with Information Visualisation and Vice Versa
Abstract. Most information visualisation methods are based on abstract visual representations without any concrete manifestation in the “real world”. However, a variety of abst...
Michael Sedlmair, Kerstin Ruhland, Fabian Hennecke...
BMCBI
2007
130views more  BMCBI 2007»
15 years 6 months ago
HMM-ModE - Improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying e
Background: Profile Hidden Markov Models (HMM) are statistical representations of protein families derived from patterns of sequence conservation in multiple alignments and have b...
Prashant K. Srivastava, Dhwani K. Desai, Soumyadee...
BMCBI
2008
114views more  BMCBI 2008»
15 years 6 months ago
Dinucleotide controlled null models for comparative RNA gene prediction
Background: Comparative prediction of RNA structures can be used to identify functional noncoding RNAs in genomic screens. It was shown recently by Babak et al. [BMC Bioinformatic...
Tanja Gesell, Stefan Washietl
DSN
2003
IEEE
15 years 12 months ago
A Data-Driven Finite State Machine Model for Analyzing Security Vulnerabilities
This paper combines an analysis of data on security vulnerabilities (published in Bugtraq database) and a focused source-code examination to develop a finite state machine (FSM) m...
Shuo Chen, Zbigniew Kalbarczyk, Jun Xu, Ravishanka...