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Multiple alignment by aligning alignments
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MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
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Sudhir Kumar, Koichiro Tamura, Masatoshi Nei
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BIOINFORMATICS
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The Jalview Java alignment editor
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Michele E. Clamp, James A. Cuff, Stephen M. J. Sea...
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Alignment of RNA base pairing probability matrices
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Ivo L. Hofacker, Stephan H. F. Bernhart, Peter F. ...
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Speeding up whole-genome alignment by indexing frequency vectors
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Tamer Kahveci, Vebjorn Ljosa, Ambuj K. Singh
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Protein homology detection using string alignment kernels
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Hiroto Saigo, Jean-Philippe Vert, Nobuhisa Ueda, T...
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