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Multiple alignment by aligning alignments
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A word-oriented approach to alignment validation
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Robert G. Beiko, Cheong Xin Chan, Mark A. Ragan
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Protein structure alignment by deterministic annealing
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Luonan Chen, Tianshou Zhou, Yun Tang
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Pairwise alignment incorporating dipeptide covariation
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Gavin E. Crooks, Richard E. Green, Steven E. Brenn...
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Stepwise detection of recombination breakpoints in sequence alignments
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Jinko Graham, Brad McNeney, Françoise Seill...
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Fold recognition by combining profile-profile alignment and support vector machine
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