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201
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RECOMB
2007
Springer
16 years 7 months ago
2007
Springer
We describe an algorithm, IsoRank, for global alignment of two protein-protein interaction (PPI) networks. IsoRank aims to maximize the overall match between the two networks; in c...
193
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RECOMB
2006
Springer
16 years 7 months ago
2006
Springer
Abstract. There is a resurgence of interest in RNA secondary structure prediction problem (a.k.a. the RNA folding problem) due to the discovery of many new families of non-coding R...
177
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RECOMB
2006
Springer
16 years 7 months ago
2006
Springer
We study the problem of enumerating substrings that are common amongst genomes that share evolutionary descent. For example, one might want to enumerate all identical (therefore co...
188
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RECOMB
2006
Springer
16 years 7 months ago
2006
Springer
The assignment of orthologous genes between a pair of genomes is a fundamental and challenging problem in comparative genomics, since many computational methods for solving various...
161
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RECOMB
2005
Springer
16 years 7 months ago
2005
Springer
Abstract. One of the simplest evolutionary models has molecular sequences evolving from a common ancestor down a bifurcating phylogenetic tree, experiencing point-mutations along t...