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IPPS
2008
IEEE
16 years 1 months ago
Supporting high performance bioinformatics flat-file data processing using indices
As an essential part of in vitro analysis, biological database query has become more and more important in the research process. A few challenges that are specific to bioinformat...
Xuan Zhang, Gagan Agrawal
LICS
2008
IEEE
16 years 1 months ago
Focusing on Binding and Computation
Variable binding is a prevalent feature of the syntax and proof theory of many logical systems. In this paper, we define a programming language that provides intrinsic support fo...
Daniel R. Licata, Noam Zeilberger, Robert Harper
PDP
2008
IEEE
16 years 1 months ago
Type Safe Algorithmic Skeletons
This paper addresses the issue of type safe algorithmic skeletons. From a theoretical perspective we contribute by: formally specifying a type system for algorithmic skeletons, an...
Denis Caromel, Ludovic Henrio, Mario Leyton
BIBE
2007
IEEE
150views Bioinformatics» more  BIBE 2007»
16 years 29 days ago
Differential Scoring for Systolic Sequence Alignment
Systolic implementations of dynamic programming solutions that utilize a similarity matrix can achieve appreciable performance with both course- and fine-grain parallelization. A ...
Antonio E. de la Serna
FCCM
2007
IEEE
146views VLSI» more  FCCM 2007»
16 years 28 days ago
Mitrion-C Application Development on SGI Altix 350/RC100
This paper provides an evaluation of SGI® RASC™ RC100 technology from a computational science software developer’s perspective. A brute force implementation of a two-point an...
Volodymyr V. Kindratenko, Robert J. Brunner, Adam ...