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BMCBI
2007
160views more  BMCBI 2007»
15 years 7 months ago
Convergent algorithms for protein structural alignment
Background: Many algorithms exist for protein structural alignment, based on internal protein coordinates or on explicit superposition of the structures. These methods are usually...
Leandro Martínez, Roberto Andreani, Jos&eac...
BMCBI
2007
181views more  BMCBI 2007»
15 years 7 months ago
Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D
Background: Macromolecular visualization as well as automated structural and functional annotation tools play an increasingly important role in the post-genomic era, contributing ...
Aleksey A. Porollo, Jaroslaw Meller
JMLR
2010
206views more  JMLR 2010»
15 years 1 months ago
Learning Translation Invariant Kernels for Classification
Appropriate selection of the kernel function, which implicitly defines the feature space of an algorithm, has a crucial role in the success of kernel methods. In this paper, we co...
Sayed Kamaledin Ghiasi Shirazi, Reza Safabakhsh, M...
POPL
2010
ACM
16 years 1 months ago
Compress-and-conquer for optimal multicore computing
We propose a programming paradigm called compress-and-conquer (CC) that leads to optimal performance on multicore platforms. Given a multicore system of p cores and a problem of s...
Zhijing G. Mou, Hai Liu, Paul Hudak
LCTRTS
2009
Springer
16 years 1 months ago
Eliminating the call stack to save RAM
Most programming languages support a call stack in the programming model and also in the runtime system. We show that for applications targeting low-power embedded microcontroller...
Xuejun Yang, Nathan Cooprider, John Regehr