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BMCBI
2007
216views more  BMCBI 2007»
15 years 6 months ago
A replica exchange Monte Carlo algorithm for protein folding in the HP model
Background: The ab initio protein folding problem consists of predicting protein tertiary structure from a given amino acid sequence by minimizing an energy function; it is one of...
Chris Thachuk, Alena Shmygelska, Holger H. Hoos
CP
2008
Springer
15 years 8 months ago
Model Restarts for Structural Symmetry Breaking
ctural abstractions that were introduced in [17]. Compared with other symmetry-breaking techniques, the big advantage of dynamic symmetry breaking is that it can accommodate dynami...
Daniel S. Heller, Aurojit Panda, Meinolf Sellmann,...
BMCBI
2007
143views more  BMCBI 2007»
15 years 7 months ago
An adaptive bin framework search method for a beta-sheet protein homopolymer model
Background: The problem of protein structure prediction consists of predicting the functional or native structure of a protein given its linear sequence of amino acids. This probl...
Alena Shmygelska, Holger H. Hoos
ESCAPE
2007
Springer
212views Algorithms» more  ESCAPE 2007»
16 years 1 months ago
Streaming Algorithms for Data in Motion
We propose two new data stream models: the reset model and the delta model, motivated by applications to databases, and to tracking the location of spatial points. We present algor...
Michael Hoffmann 0002, S. Muthukrishnan, Rajeev Ra...
EMNLP
2006
15 years 8 months ago
Statistical Ranking in Tactical Generation
In this paper we describe and evaluate several statistical models for the task of realization ranking, i.e. the problem of discriminating between competing surface realizations ge...
Erik Velldal, Stephan Oepen