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» Modelling Coordination in Biological Systems
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CISIS
2009
IEEE
16 years 1 months ago
A Nonmonotonic Logical Approach for Modelling and Revising Metabolic Networks
—This paper describes a new logic-based approach for representing and reasoning about metabolic networks. First it shows how biological pathways can be elegantly represented in a...
Oliver Ray, Ken E. Whelan, Ross D. King
BIBM
2009
IEEE
183views Bioinformatics» more  BIBM 2009»
15 years 11 months ago
Modeling Protein Interaction Networks with Answer Set Programming
—In this paper we propose the use of answer set programming (ASP) to model protein interaction networks. We argue that this declarative formalism rivals the popular boolean netwo...
Timur Fayruzov, Martine De Cock, Chris Cornelis, D...
ESANN
2008
15 years 8 months ago
A neural model with feedback for robust disambiguation of motion
Abstract. The aperture problem is a direct consequence of any local detection in the visual perception of motion. It results in ambiguous responses of the local motion detectors. B...
Mauricio Cerda, Bernard Girau
CPHYSICS
2007
96views more  CPHYSICS 2007»
15 years 6 months ago
Simple models for biomembrane structure and dynamics
Simulation of biomembranes over length and time scales relevant to cellular biology is not currently feasible with molecular dynamics including full atomic detail. Barring an unfo...
Frank L. H. Brown
CONNECTION
2006
101views more  CONNECTION 2006»
15 years 6 months ago
High capacity, small world associative memory models
Models of associative memory usually have full connectivity or if diluted, random symmetric connectivity. In contrast, biological neural systems have predominantly local, non-symm...
Neil Davey, Lee Calcraft, Rod Adams