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» Modelling Coordination in Biological Systems
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ICCABS
2011
14 years 10 months ago
High-performance biocomputing for simulating the spread of contagion over large contact networks
Abstract—Many important biological problems can be modeled as contagion diffusion processes over interaction networks. This paper shows how the EpiSimdemics interaction-based sim...
Keith R. Bisset, Ashwin M. Aji, Madhav V. Marathe,...
ISAMI
2010
15 years 4 months ago
Employing Compact Intra-genomic Language Models to Predict Genomic Sequences and Characterize Their Entropy
Probabilistic models of languages are fundamental to understand and learn the profile of the subjacent code in order to estimate its entropy, enabling the verification and predicti...
Sérgio A. D. Deusdado, Paulo Carvalho
DNA
2007
Springer
127views Bioinformatics» more  DNA 2007»
16 years 22 days ago
Discrete Simulations of Biochemical Dynamics
Abstract. Metabolic P systems, shortly MP systems, are a special class of P systems, introduced for expressing biological metabolism. Their dynamics are computed by metabolic algor...
Vincenzo Manca
ICNC
2005
Springer
16 years 2 days ago
Typing Aberrance in Signal Transduction
We have developed a calculus, called Ipi, for describing the aberrance in biological models. Our approach extends the traditional pi calculus to handle aberrant process in the sign...
Min Zhang, Guoqiang Li, Yuxi Fu, Zhizhou Zhang, Li...
BIOCOMP
2010
15 years 4 months ago
A Model Reduction Technique for Stochastic Biochemical Kinetics
Abstract-- Modeling the intermolecular reactions in a single cell is a critical problem in computational biology. Biochemical reaction systems often involve species in both low and...
Silvana Ilie, Ekaterina Kudashkina