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» Modelling Coordination in Biological Systems
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CORR
2010
Springer
101views Education» more  CORR 2010»
15 years 6 months ago
Computing the Least Fixed Point of Positive Polynomial Systems
We consider equation systems of the form X1 = f1(X1, . . . , Xn), . . . , Xn = fn(X1, . . . , Xn) where f1, . . . , fn are polynomials with positive real coefficients. In vector fo...
Javier Esparza, Stefan Kiefer, Michael Luttenberge...
BMCBI
2010
232views more  BMCBI 2010»
15 years 6 months ago
LucidDraw: Efficiently visualizing complex biochemical networks within MATLAB
Background: Biochemical networks play an essential role in systems biology. Rapidly growing network data and e research activities call for convenient visualization tools to aid i...
Sheng He, Juan Mei, Guiyang Shi, Zhengxiang Wang, ...
CAV
2010
Springer
227views Hardware» more  CAV 2010»
15 years 4 months ago
Breach, A Toolbox for Verification and Parameter Synthesis of Hybrid Systems
We describe Breach, a Matlab toolbox providing a coherent set of simulation-based techniques aimed at the analysis of deterministic models of hybrid dynamical systems. The primary ...
Alexandre Donzé
COORDINATION
2008
Springer
15 years 8 months ago
Actors with Multi-headed Message Receive Patterns
Abstract. The actor model provides high-level concurrency abstractions to coordinate simultaneous computations by message passing. Languages implementing the actor model such as Er...
Martin Sulzmann, Edmund S. L. Lam, Peter Van Weert
CMSB
2008
Springer
15 years 8 months ago
Automatic Complexity Analysis and Model Reduction of Nonlinear Biochemical Systems
Kinetic models for biochemical systems often comprise a large amount of coupled differential equations with species concentrations varying on different time scales. In this paper w...
Dirk Lebiedz, Dominik Skanda, Marc Fein