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BMCBI
2007
182views more  BMCBI 2007»
15 years 7 months ago
Additive risk survival model with microarray data
Background: Microarray techniques survey gene expressions on a global scale. Extensive biomedical studies have been designed to discover subsets of genes that are associated with ...
Shuangge Ma, Jian Huang
BMCBI
2007
142views more  BMCBI 2007»
15 years 7 months ago
Improving model construction of profile HMMs for remote homology detection through structural alignment
Background: Remote homology detection is a challenging problem in Bioinformatics. Arguably, profile Hidden Markov Models (pHMMs) are one of the most successful approaches in addre...
Juliana S. Bernardes, Alberto M. R. Dávila,...
BMCBI
2008
118views more  BMCBI 2008»
15 years 7 months ago
Inferring transcriptional compensation interactions in yeast via stepwise structure equation modeling
Background: With the abundant information produced by microarray technology, various approaches have been proposed to infer transcriptional regulatory networks. However, few appro...
Grace S. Shieh, Chung-Ming Chen, Ching-Yun Yu, Jui...
BMCBI
2007
94views more  BMCBI 2007»
15 years 7 months ago
Model based analysis of real-time PCR data from DNA binding dye protocols
Background: Reverse transcription followed by real-time PCR is widely used for quantification of specific mRNA, and with the use of double-stranded DNA binding dyes it is becoming...
Mariano J. Alvarez, Guillermo J. Vila-Ortiz, Maria...
PROPERTYTESTING
2010
15 years 5 months ago
Sublinear Algorithms in the External Memory Model
We initiate the study of sublinear-time algorithms in the external memory model [Vit01]. In this model, the data is stored in blocks of a certain size B, and the algorithm is char...
Alexandr Andoni, Piotr Indyk, Krzysztof Onak, Roni...