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BMCBI
2008
126views more  BMCBI 2008»
15 years 6 months ago
Relating gene expression data on two-component systems to functional annotations in Escherichia coli
Background: Obtaining physiological insights from microarray experiments requires computational techniques that relate gene expression data to functional information. Traditionall...
Anne M. Denton, Jianfei Wu, Megan K. Townsend, Pre...
BMCBI
2008
129views more  BMCBI 2008»
15 years 6 months ago
Gene set enrichment analysis for non-monotone association and multiple experimental categories
Background: Recently, microarray data analyses using functional pathway information, e.g., gene set enrichment analysis (GSEA) and significance analysis of function and expression...
Rongheng Lin, Shuangshuang Dai, Richard D. Irwin, ...
ALIFE
2006
15 years 6 months ago
Picture This: The State of the Art in Visualization for Complex Adaptive Systems
Visualization has an increasingly important role to play in scientific research. Moreover, visualization has a special role to play within artificial life as a result of the inform...
Seth Bullock, Tom Smith, Jon Bird
BMCBI
2007
131views more  BMCBI 2007»
15 years 6 months ago
An improved method for identifying functionally linked proteins using phylogenetic profiles
Background: Phylogenetic profiles record the occurrence of homologs of genes across fully sequenced organisms. Proteins with similar profiles are typically components of protein c...
Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini
TPDS
2008
118views more  TPDS 2008»
15 years 6 months ago
Interaction of ISPs: Distributed Resource Allocation and Revenue Maximization
The Internet is a hierarchical architecture comprising heterogeneous entities of privately owned infrastructures, where higher level Internet service providers (ISPs) supply conne...
Sam C. M. Lee, Joe Wenjie Jiang, Dah-Ming Chiu, Jo...