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RECOMB
2010
Springer
15 years 4 months ago
Predicting Nucleosome Positioning Using Multiple Evidence Tracks
Abstract. We describe a probabilistic model, implemented as a dynamic Bayesian network, that can be used to predict nucleosome positioning along a chromosome based on one or more g...
Sheila M. Reynolds, Zhiping Weng, Jeff A. Bilmes, ...
AAAI
2000
15 years 7 months ago
Semantics and Inference for Recursive Probability Models
In recent years, there have been several proposals that extend the expressive power of Bayesian networks with that of relational models. These languages open the possibility for t...
Avi Pfeffer, Daphne Koller
BCB
2010
175views Bioinformatics» more  BCB 2010»
15 years 1 months ago
Gene set analysis using principal components
We present a new method for identifying gene sets associated with labeled samples, where the labels can be case versus control, or genotype differences. Existing approaches to thi...
Isa Kemal Pakatci, Wei Wang, Leonard McMillan
BMCBI
2010
152views more  BMCBI 2010»
15 years 6 months ago
Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis
Background: One of the challenges of bioinformatics remains the recognition of short signal sequences in genomic DNA such as donor or acceptor splice sites, splicing enhancers or ...
Jens Keilwagen, Jan Grau, Stefan Posch, Ivo Grosse
RECOMB
2003
Springer
16 years 6 months ago
Optimizing exact genetic linkage computations
Genetic linkage analysis is a challenging application which requires Bayesian networks consisting of thousands of vertices. Consequently, computing the likelihood of data, which i...
Dan Geiger, Maáyan Fishelson