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BMCBI
2011
15 years 1 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
CORR
2011
Springer
142views Education» more  CORR 2011»
14 years 10 months ago
Taming Numbers and Durations in the Model Checking Integrated Planning System
The Model Checking Integrated Planning System (MIPS) has shown distinguished performance in the second and third international planning competitions. With its object-oriented fram...
Stefan Edelkamp
BMCBI
2011
14 years 10 months ago
Efficient alignment of pyrosequencing reads for re-sequencing applications
Background: Over the past few years, new massively parallel DNA sequencing technologies have emerged. These platforms generate massive amounts of data per run, greatly reducing th...
Francisco Fernandes, Paulo G. S. da Fonseca, Lu&ia...
BMCBI
2011
14 years 10 months ago
SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data
Background: The popularity of massively parallel exome and transcriptome sequencing projects demands new data mining tools with a comprehensive set of features to support a wide r...
Xutao Deng
SIGMOD
2011
ACM
210views Database» more  SIGMOD 2011»
14 years 9 months ago
A platform for scalable one-pass analytics using MapReduce
Today’s one-pass analytics applications tend to be data-intensive in nature and require the ability to process high volumes of data efficiently. MapReduce is a popular programm...
Boduo Li, Edward Mazur, Yanlei Diao, Andrew McGreg...
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