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BMCBI
2010
164views more  BMCBI 2010»
15 years 6 months ago
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL
Background: Molecular interaction networks can be efficiently studied using network visualization software such as Cytoscape. The relevant nodes, edges and their attributes can be...
Kris Laukens, Jens Hollunder, Thanh Hai Dang, Geer...
BMCBI
2008
144views more  BMCBI 2008»
15 years 6 months ago
WGCNA: an R package for weighted correlation network analysis
Background: Correlation networks are increasingly being used in bioinformatics applications. For example, weighted gene co-expression network analysis is a systems biology method ...
Peter Langfelder, Steve Horvath
BMCBI
2008
173views more  BMCBI 2008»
15 years 6 months ago
Improved machine learning method for analysis of gas phase chemistry of peptides
Background: Accurate peptide identification is important to high-throughput proteomics analyses that use mass spectrometry. Search programs compare fragmentation spectra (MS/MS) o...
Allison Gehrke, Shaojun Sun, Lukasz A. Kurgan, Nat...
DATAMINE
2006
89views more  DATAMINE 2006»
15 years 6 months ago
Scalable Clustering Algorithms with Balancing Constraints
Clustering methods for data-mining problems must be extremely scalable. In addition, several data mining applications demand that the clusters obtained be balanced, i.e., be of ap...
Arindam Banerjee, Joydeep Ghosh
NAR
2007
113views more  NAR 2007»
15 years 5 months ago
The UCSC genome browser database: update 2007
The University of California, Santa Cruz Genome Browser Database contains, as of September 2006, sequence and annotation data for the genomes of 13 vertebrate and 19 invertebrate ...
Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Hea...