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» Mining Quantitative Association Rules in Protein Sequences
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PKDD
2009
Springer
134views Data Mining» more  PKDD 2009»
16 years 17 days ago
Mining Graph Evolution Rules
In this paper we introduce graph-evolution rules, a novel type of frequency-based pattern that describe the evolution of large networks over time, at a local level. Given a sequenc...
Michele Berlingerio, Francesco Bonchi, Björn ...
SDM
2009
SIAM
170views Data Mining» more  SDM 2009»
16 years 3 months ago
Mining Complex Spatio-Temporal Sequence Patterns.
Mining sequential movement patterns describing group behaviour in potentially streaming spatio-temporal data sets is a challenging problem. Movements are typically noisy and often...
Florian Verhein
BMCBI
2010
162views more  BMCBI 2010»
15 years 6 months ago
Moara: a Java library for extracting and normalizing gene and protein mentions
Background: Gene/protein recognition and normalization are important preliminary steps for many biological text mining tasks, such as information retrieval, protein-protein intera...
Mariana L. Neves, José María Carazo,...
BMCBI
2006
114views more  BMCBI 2006»
15 years 6 months ago
PROMPT: a protein mapping and comparison tool
Background: Comparison of large protein datasets has become a standard task in bioinformatics. Typically researchers wish to know whether one group of proteins is significantly en...
Thorsten Schmidt, Dmitrij Frishman
BMCBI
2008
127views more  BMCBI 2008»
15 years 6 months ago
MetaMine - A tool to detect and analyse gene patterns in their environmental context
Background: Modern sequencing technologies allow rapid sequencing and bioinformatic analysis of genomes and metagenomes. With every new sequencing project a vast number of new pro...
Uta Bohnebeck, Thierry Lombardot, Renzo Kottmann, ...