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BMCBI
2011
15 years 1 months ago
RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis
Background: The Gene Ontology (GO) Consortium organizes genes into hierarchical categories based on biological process, molecular function and subcellular localization. Tools such...
Barry Zeeberg, Hongfang Liu, Ari B. Kahn, Martin E...
292
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POPL
2009
ACM
16 years 7 months ago
Modular code generation from synchronous block diagrams: modularity vs. code size
We study modular, automatic code generation from hierarchical block diagrams with synchronous semantics. Such diagrams are the fundamental model behind widespread tools in the emb...
Roberto Lublinerman, Christian Szegedy, Stavros Tr...
RECOMB
2009
Springer
16 years 7 months ago
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations
Collective behavior involving distally separate regions in a protein is known to widely affect its function. In this paper, we present an online approach to study and characterize ...
Arvind Ramanathan, Pratul K. Agarwal, Maria Kurnik...
PODC
2009
ACM
16 years 7 months ago
Concurrent imitation dynamics in congestion games
Imitating successful behavior is a natural and frequently applied approach to trust in when facing scenarios for which we have little or no experience upon which we can base our d...
Heiner Ackermann, Petra Berenbrink, Simon Fischer,...
ICFP
2006
ACM
16 years 6 months ago
Type-theoretic design patterns
The development of design patterns in object-oriented programming aims at capturing good software design in a re-usable generic form. However, design patterns are not expressible ...
Ondrej Rypacek, Roland Carl Backhouse, Henrik Nils...