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SIAMSC
2008
131views more  SIAMSC 2008»
15 years 6 months ago
Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces
Many important physiological processes operate at time and space scales far beyond those accessible to atom-realistic simulations, and yet discrete stochastic rather than continuum...
Rex A. Kerr, Thomas M. Bartol, Boris Kaminsky, Mar...
BMCBI
2005
90views more  BMCBI 2005»
15 years 6 months ago
TMB-Hunt: An amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins
Background: Beta-barrel transmembrane (bbtm) proteins are a functionally important and diverse group of proteins expressed in the outer membranes of bacteria (both gram negative a...
Andrew G. Garrow, Alison Agnew, David R. Westhead
JCB
2007
136views more  JCB 2007»
15 years 6 months ago
A Structure-Based Flexible Search Method for Motifs in RNA
The discovery of non-coding RNA (ncRNA) motifs and their role in regulating gene expression has recently attracted considerable attention. The goal is to discover these motifs in ...
Isana Veksler-Lublinsky, Michal Ziv-Ukelson, Danny...
SIAMDM
2010
137views more  SIAMDM 2010»
15 years 5 months ago
Repetition Error Correcting Sets: Explicit Constructions and Prefixing Methods
In this paper we study the problem of finding maximally sized subsets of binary strings (codes) of equal length that are immune to a given number r of repetitions, in the sense th...
Lara Dolecek, Venkat Anantharam
PAMI
2012
13 years 9 months ago
Exploring Context and Content Links in Social Media: A Latent Space Method
—Social media networks contain both content and context-specific information. Most existing methods work with either of the two for the purpose of multimedia mining and retrieva...
Guo-Jun Qi, Charu C. Aggarwal, Qi Tian, Heng Ji, T...