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BMCBI
2008
147views more  BMCBI 2008»
15 years 7 months ago
Transmembrane helix prediction using amino acid property features and latent semantic analysis
Background: Prediction of transmembrane (TM) helices by statistical methods suffers from lack of sufficient training data. Current best methods use hundreds or even thousands of f...
Madhavi Ganapathiraju, Narayanas Balakrishnan, Raj...
ALMOB
2006
135views more  ALMOB 2006»
15 years 7 months ago
P-value based visualization of codon usage data
Two important and not yet solved problems in bacterial genome research are the identification of horizontally transferred genes and the prediction of gene expression levels. Both ...
Peter Meinicke, Thomas Brodag, Wolfgang Florian Fr...
BMCBI
2007
105views more  BMCBI 2007»
15 years 6 months ago
Extended analysis of benchmark datasets for Agilent two-color microarrays
Background: As part of its broad and ambitious mission, the MicroArray Quality Control (MAQC) project reported the results of experiments using External RNA Controls (ERCs) on fiv...
Kathleen F. Kerr
BMCBI
2007
100views more  BMCBI 2007»
15 years 6 months ago
Discovering structural motifs using a structural alphabet: Application to magnesium-binding sites
Background: For many metalloproteins, sequence motifs characteristic of metal-binding sites have not been found or are so short that they would not be expected to be metal-specifi...
Minko Dudev, Carmay Lim
190
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JIIS
2006
113views more  JIIS 2006»
15 years 6 months ago
Spatial ordering and encoding for geographic data mining and visualization
: Geographic information (e.g., locations, networks, and nearest neighbors) are unique and different from other aspatial attributes (e.g., population, sales, or income). It is a ch...
Diansheng Guo, Mark Gahegan