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154
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MFCS
2005
Springer
15 years 11 months ago
Reconstructing an Ultrametric Galled Phylogenetic Network from a Distance Matrix
Abstract. Given a distance matrix M that specifies the pairwise evolutionary distances between n species, the phylogenetic tree reconstruction problem asks for an edge-weighted ph...
Ho-Leung Chan, Jesper Jansson, Tak Wah Lam, Siu-Mi...
ICMCS
2009
IEEE
250views Multimedia» more  ICMCS 2009»
15 years 3 months ago
Efficient sparse self-similarity matrix construction for repeating sequence detection
This paper presents an efficient way to construct the self-similarity matrix, a popular approach, to detect repeating segments in music. Our proposed method extends the sparse suf...
Lei Wang, Chng Eng Siong, Haizhou Li
STACS
1999
Springer
15 years 10 months ago
Balanced Randomized Tree Splitting with Applications to Evolutionary Tree Constructions
We present a new technique called balanced randomized tree splitting. It is useful in constructing unknown trees recursively. By applying it we obtain two new results on efficient ...
Ming-Yang Kao, Andrzej Lingas, Anna Östlin
169
Voted
ALGORITHMICA
1999
99views more  ALGORITHMICA 1999»
15 years 5 months ago
Evolutionary Trees and Ordinal Assertions
Sequence data for a group of species is often summarized by a distance matrix M where M[s, t] is the dissimilarity between the sequences of species s and t. An ordinal assertion is...
Paul E. Kearney, Ryan Hayward, Henk Meijer
187
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EUROPAR
2000
Springer
15 years 9 months ago
Ahnentafel Indexing into Morton-Ordered Arrays, or Matrix Locality for Free
Abstract. Definitions for the uniform representation of d-dimensional matrices serially in Morton-order (or Z-order) support both their use with cartesian indices, and their divide...
David S. Wise