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RECOMB
2006
Springer
16 years 6 months ago
Evolution of Tandemly Repeated Sequences Through Duplication and Inversion
Abstract. Given a phylogenetic tree T for a family of tandemly repeated genes and their signed order O on the chromosome, we aim to find the minimum number of inversions compatible...
Denis Bertrand, Mathieu Lajoie, Nadia El-Mabrouk, ...
RECOMB
2001
Springer
16 years 6 months ago
Fast recovery of evolutionary trees with thousands of nodes
We present a novel distance-based algorithm for evolutionary tree reconstruction. Our algorithm reconstructs the topology of a tree with n leaves in O(n2 ) time using O(n) working...
Miklós Csürös
RECOMB
2009
Springer
16 years 28 days ago
Inferring the Recent Duplication History of a Gene Cluster
Abstract. Much important evolutionary activity occurs in gene clusters, where a copy of a gene may be free to evolve new functions. Computational methods to extract evolutionary in...
Giltae Song, Louxin Zhang, Tomás Vinar, Web...
CMSB
2009
Springer
16 years 22 days ago
Approximation of Event Probabilities in Noisy Cellular Processes
Molecular noise, which arises from the randomness of the discrete events in the cell, significantly influences fundamental biological processes. Discrete-state continuous-time st...
Frédéric Didier, Thomas A. Henzinger...
FCCM
2007
IEEE
117views VLSI» more  FCCM 2007»
16 years 15 days ago
FPGA Acceleration of Gene Rearrangement Analysis
In this paper we present our work toward FPGA acceleration of phylogenetic reconstruction, a type of analysis that is commonly performed in the fields of systematic biology and co...
Jason D. Bakos