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PPSC
1993
15 years 8 months ago
A Matrix Framework for Conjugate Gradient Methods and Some Variants of CG with Less Synchronization Overhead
We will present a matrix framework for the conjugate gradient methods, which is expressed in terms of whole vector sequences instead of single vectors or initial parts of sequence...
Eduardo F. D'Azevedo, Victor Eijkhout, Charles H. ...
BMCBI
2010
136views more  BMCBI 2010»
15 years 6 months ago
SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale
Background: An important problem in genomics is the automatic inference of groups of homologous proteins from pairwise sequence similarities. Several approaches have been proposed...
Tamás Nepusz, Rajkumar Sasidharan, Alberto ...
BMCBI
2005
117views more  BMCBI 2005»
15 years 6 months ago
Differentiation of regions with atypical oligonucleotide composition in bacterial genomes
Background: Complete sequencing of bacterial genomes has become a common technique of present day microbiology. Thereafter, data mining in the complete sequence is an essential st...
Oleg N. Reva, Burkhard Tümmler
CN
1999
100views more  CN 1999»
15 years 6 months ago
Testing protocols modeled as FSMs with timing parameters
An optimization method is introduced for generating minimum-length test sequences taking into account timing constraints for FSM models of communication protocols. Due to active t...
M. Ümit Uyar, Mariusz A. Fecko, Adarshpal S. ...
BMCBI
2011
15 years 1 months ago
Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies
Background: Next-generation sequencing technologies allow genomes to be sequenced more quickly and less expensively than ever before. However, as sequencing technology has improve...
Joshua Wetzel, Carl Kingsford, Mihai Pop