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» Mapping sequences by parts
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ADAEUROPE
2003
Springer
15 years 11 months ago
Charles: A Data Structure Library for Ada95
ontainer. In particular, an iterator abstracts away differences in specific container types, allowing you to view the collection simply as a sequence of items. A generic algorith...
Matthew Heaney
SIGMOD
2010
ACM
277views Database» more  SIGMOD 2010»
15 years 11 months ago
A comparison of join algorithms for log processing in MaPreduce
The MapReduce framework is increasingly being used to analyze large volumes of data. One important type of data analysis done with MapReduce is log processing, in which a click-st...
Spyros Blanas, Jignesh M. Patel, Vuk Ercegovac, Ju...
ISMB
2000
15 years 8 months ago
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
We have developed a set of methods and tools for automatic discovery of putative regulatory signals in genome sequences. The analysis pipeline consists of gene expression data clu...
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Ro...
BMCBI
2007
100views more  BMCBI 2007»
15 years 6 months ago
Discovering structural motifs using a structural alphabet: Application to magnesium-binding sites
Background: For many metalloproteins, sequence motifs characteristic of metal-binding sites have not been found or are so short that they would not be expected to be metal-specifi...
Minko Dudev, Carmay Lim
BMCBI
2005
117views more  BMCBI 2005»
15 years 6 months ago
An SVM-based system for predicting protein subnuclear localizations
Background: The large gap between the number of protein sequences in databases and the number of functionally characterized proteins calls for the development of a fast computatio...
Zhengdeng Lei, Yang Dai