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2004
Springer
16 years 7 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
STOC
2007
ACM
100views Algorithms» more  STOC 2007»
16 years 7 months ago
Reordering buffers for general metric spaces
In the reordering buffer problem, we are given an input sequence of requests for service each of which corresponds to a point in a metric space. The cost of serving the requests h...
Matthias Englert, Harald Räcke, Matthias West...
STOC
2006
ACM
92views Algorithms» more  STOC 2006»
16 years 7 months ago
On the importance of idempotence
Range searching is among the most fundamental problems in computational geometry. An n-element point set in Rd is given along with an assignment of weights to these points from so...
Sunil Arya, Theocharis Malamatos, David M. Mount
STOC
2006
ACM
174views Algorithms» more  STOC 2006»
16 years 7 months ago
Edge-disjoint paths in Planar graphs with constant congestion
We study the maximum edge-disjoint paths problem in undirected planar graphs: given a graph G and node pairs s1t1, s2t2, . . ., sktk, the goal is to maximize the number of pairs t...
Chandra Chekuri, Sanjeev Khanna, F. Bruce Shepherd
STOC
2006
ACM
122views Algorithms» more  STOC 2006»
16 years 7 months ago
Fast convergence to Wardrop equilibria by adaptive sampling methods
We study rerouting policies in a dynamic round-based variant of a well known game theoretic traffic model due to Wardrop. Previous analyses (mostly in the context of selfish routi...
Simon Fischer, Harald Räcke, Berthold Vö...