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BMCBI
2011
14 years 10 months ago
Structator: fast index-based search for RNA sequence-structure patterns
Background: The secondary structure of RNA molecules is intimately related to their function and often more conserved than the sequence. Hence, the important task of searching dat...
Fernando Meyer, Stefan Kurtz, Rolf Backofen, Sebas...
JCC
2011
154views more  JCC 2011»
14 years 9 months ago
Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database
: Docking is one of the most commonly used techniques in drug design. It is used for both identifying correct poses of a ligand in the binding site of a protein as well as for the ...
Dariusz Plewczynski, Michal Lazniewski, Rafal Augu...
PPOPP
2012
ACM
14 years 1 months ago
Internally deterministic parallel algorithms can be fast
The virtues of deterministic parallelism have been argued for decades and many forms of deterministic parallelism have been described and analyzed. Here we are concerned with one ...
Guy E. Blelloch, Jeremy T. Fineman, Phillip B. Gib...
JMLR
2012
13 years 8 months ago
Random Search for Hyper-Parameter Optimization
Grid search and manual search are the most widely used strategies for hyper-parameter optimization. This paper shows empirically and theoretically that randomly chosen trials are ...
James Bergstra, Yoshua Bengio
CSFW
2012
IEEE
13 years 8 months ago
Provably Secure and Practical Onion Routing
The onion routing network Tor is undoubtedly the most widely employed technology for anonymous web access. Although the underlying onion routing (OR) protocol appears satisfactory...
Michael Backes, Ian Goldberg, Aniket Kate, Esfandi...