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» Logical systems for structured specifications
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BMCBI
2011
15 years 1 months ago
A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines
Background: Bioinformatic analyses typically proceed as chains of data-processing tasks. A pipeline, or ‘workflow’, is a well-defined protocol, with a specific structure defin...
Marcin Cieslik, Cameron Mura
DIAGRAMS
2006
Springer
15 years 8 months ago
From Diagrams to Models by Analogical Transfer
Abstract. We present a method for constructing a teleological model of a drawing of a physical device through analogical transfer of the teleological model of the same device in an...
Patrick W. Yaner, Ashok K. Goel
BMCBI
2007
144views more  BMCBI 2007»
15 years 6 months ago
Assessing the ability of sequence-based methods to provide functional insight within membrane integral proteins: a case study an
Background: Efforts to predict functional sites from globular proteins is increasingly common; however, the most successful of these methods generally require structural insight. ...
Dennis R. Livesay, Patrick D. Kidd, Sepehr Eskanda...
ICSE
2008
IEEE-ACM
16 years 7 months ago
A case study evaluation of maintainability and performance of persistency techniques
Efforts for software evolution supersede any other part of the software life cycle. Technological decisions have a major impact on the maintainability, but are not well reflected ...
Thomas Goldschmidt, Ralf Reussner, Jochen Winzen
SIGSOFT
2004
ACM
16 years 6 months ago
Implementing protocols via declarative event patterns
This paper introduces declarative event patterns (DEPs) as a means to implement protocols while improving their traceability, comprehensibility, and maintainability. DEPs are desc...
Robert J. Walker, Kevin Viggers