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BIOCOMP
2006
15 years 8 months ago
Acceleration of Covariance Models for Non-coding RNA Search
Stochastic context-free grammar (SCFG) based models for non-coding RNA (ncRNA) gene searches are much more powerful than regular grammar based models due to the ability to model in...
Scott F. Smith 0002
JMLR
2012
13 years 9 months ago
Active Clustering of Biological Sequences
Given a point set S and an unknown metric d on S, we study the problem of efficiently partitioning S into k clusters while querying few distances between the points. In our model...
Konstantin Voevodski, Maria-Florina Balcan, Heiko ...
BMCBI
2010
133views more  BMCBI 2010»
15 years 7 months ago
Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis
Background: Analysis of data from high-throughput experiments depends on the availability of well-structured data that describe the assayed biomolecules. Procedures for obtaining ...
Henning Redestig, Miyako Kusano, Atsushi Fukushima...
PVLDB
2008
98views more  PVLDB 2008»
15 years 6 months ago
Performance profiling with EndoScope, an acquisitional software monitoring framework
We propose EndoScope, a software monitoring framework that allows users to pose declarative queries that monitor the state and performance of running programs. Unlike most existin...
Alvin Cheung, Samuel Madden
ECOOP
1999
Springer
15 years 11 months ago
An Approach to Classify Semi-structured Objects
Several advanced applications, such as those dealing with the Web, need to handle data whose structure is not known a-priori. Such requirement severely limits the applicability of ...
Elisa Bertino, Giovanna Guerrini, Isabella Merlo, ...