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RECOMB
1997
Springer
15 years 10 months ago
A branch-and-cut algorithm for multiple sequence alignment
Multiple sequence alignment is an important problem in computational biology. We study the Maximum Trace formulation introduced by Kececioglu [?]. We first phrase the problem in ...
Knut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kur...
ATAL
2008
Springer
15 years 8 months ago
Playing games for security: an efficient exact algorithm for solving Bayesian Stackelberg games
In a class of games known as Stackelberg games, one agent (the leader) must commit to a strategy that can be observed by the other agent (the follower or adversary) before the adv...
Praveen Paruchuri, Jonathan P. Pearce, Janusz Mare...
ALGORITHMICA
2006
139views more  ALGORITHMICA 2006»
15 years 6 months ago
CONQUEST: A Coarse-Grained Algorithm for Constructing Summaries of Distributed Discrete Datasets
Abstract. In this paper we present a coarse-grained parallel algorithm, CONQUEST, for constructing boundederror summaries of high-dimensional binary attributed data in a distribute...
Jie Chi, Mehmet Koyutürk, Ananth Grama
ANCS
2007
ACM
15 years 10 months ago
An improved algorithm to accelerate regular expression evaluation
Modern network intrusion detection systems need to perform regular expression matching at line rate in order to detect the occurrence of critical patterns in packet payloads. Whil...
Michela Becchi, Patrick Crowley
CORR
2010
Springer
144views Education» more  CORR 2010»
15 years 6 months ago
Algorithmic Verification of Single-Pass List Processing Programs
We introduce streaming data string transducers that map input data strings to output data strings in a single left-to-right pass in linear time. Data strings are (unbounded) seque...
Rajeev Alur, Pavol Cerný