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» Limits on the Usefulness of Random Oracles
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BMCBI
2010
176views more  BMCBI 2010»
15 years 6 months ago
Bayesian statistical modelling of human protein interaction network incorporating protein disorder information
Background: We present a statistical method of analysis of biological networks based on the exponential random graph model, namely p2-model, as opposed to previous descriptive app...
Svetlana Bulashevska, Alla Bulashevska, Roland Eil...
BMCBI
2008
123views more  BMCBI 2008»
15 years 6 months ago
PocketMatch: A new algorithm to compare binding sites in protein structures
Background: Recognizing similarities and deriving relationships among protein molecules is a fundamental requirement in present-day biology. Similarities can be present at various...
Kalidas Yeturu, Nagasuma Chandra
BMCBI
2008
145views more  BMCBI 2008»
15 years 6 months ago
The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction
Background: Amino acids responsible for structure, core function or specificity may be inferred from multiple protein sequence alignments where a limited set of residue types are ...
Jonathan R. Manning, Emily R. Jefferson, Geoffrey ...
BMCBI
2008
120views more  BMCBI 2008»
15 years 6 months ago
E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI)
Background: The Codon Adaptation Index (CAI) is a measure of the synonymous codon usage bias for a DNA or RNA sequence. It quantifies the similarity between the synonymous codon u...
Pere Puigbò, Ignacio G. Bravo, Santiago Gar...
CORR
2010
Springer
190views Education» more  CORR 2010»
15 years 6 months ago
Overlap properties of geometric expanders
The overlap number of a finite (d + 1)-uniform hypergraph H is the largest constant c(H) (0, 1] such that no matter how we map the vertices of H into Rd , there is a point covered...
Jacob Fox, Mikhail Gromov, Vincent Lafforgue, Assa...