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ISMB
2000
15 years 8 months ago
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
We have developed a set of methods and tools for automatic discovery of putative regulatory signals in genome sequences. The analysis pipeline consists of gene expression data clu...
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Ro...
ACISICIS
2007
IEEE
16 years 1 months ago
A Hybrid Simulated Annealing with Kempe Chain Neighborhood for the University Timetabling Problem
This paper addresses the problem of finding a feasible solution for the University Course Timetabling Problem (UCTP), i.e. a solution that satisfies all the so-called hard const...
Mauritsius Tuga, Regina Berretta, Alexandre Mendes
BMCBI
2004
91views more  BMCBI 2004»
15 years 6 months ago
Improved hit criteria for DNA local alignment
The hit criterion is a key component of heuristic local alignment algorithms. It specifies a class of patterns assumed to witness a potential similarity, and this choice is decisi...
Laurent Noé, Gregory Kucherov
PLDI
2004
ACM
16 years 1 days ago
Cloning-based context-sensitive pointer alias analysis using binary decision diagrams
This paper presents the first scalable context-sensitive, inclusionbased pointer alias analysis for Java programs. Our approach to context sensitivity is to create a clone of a m...
John Whaley, Monica S. Lam
ICDM
2007
IEEE
156views Data Mining» more  ICDM 2007»
15 years 10 months ago
Computing Correlation Anomaly Scores Using Stochastic Nearest Neighbors
This paper addresses the task of change analysis of correlated multi-sensor systems. The goal of change analysis is to compute the anomaly score of each sensor when we know that t...
Tsuyoshi Idé, Spiros Papadimitriou, Michail...