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SSDBM
2006
IEEE
163views Database» more  SSDBM 2006»
16 years 14 days ago
ACache: Using Caching to Improve the Performance of Multiple Sequence Alignments
Multiple sequence alignment represents a class of powerful bioinformatics tools with many uses in computational biology ranging from discovery of characteristic motifs and conserv...
Xun Tu, Kajal T. Claypool, Cindy X. Chen
PLDI
2005
ACM
16 years 12 hour ago
Automatic pool allocation: improving performance by controlling data structure layout in the heap
This paper describes Automatic Pool Allocation, a transformation framework that segregates distinct instances of heap-based data structures into seperate memory pools and allows h...
Chris Lattner, Vikram S. Adve
WOSP
2004
ACM
15 years 12 months ago
Using locality of reference to improve performance of peer-to-peer applications
Peer-to-peer, or simply P2P, systems have recently emerged as a popular paradigm for building distributed applications. One key aspect of the P2P system design is the mechanism us...
Marcelo Werneck Barbosa, Melissa Morgado Costa, Ju...
FOCS
1993
IEEE
15 years 10 months ago
An On-Line Algorithm for Improving Performance in Navigation
We consider the following scenario. A point robot is placed at some start location ¡ in a 2dimensional scene containing oriented rectangular obstacles. The robot must repeatedly ...
Avrim Blum, Prasad Chalasani
BMCBI
2010
133views more  BMCBI 2010»
15 years 6 months ago
Improving de novo sequence assembly using machine learning and comparative genomics for overlap correction
Background: With the rapid expansion of DNA sequencing databases, it is now feasible to identify relevant information from prior sequencing projects and completed genomes and appl...
Lance E. Palmer, Mathäus Dejori, Randall A. B...