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BMCBI
2005
131views more  BMCBI 2005»
15 years 5 months ago
Functional annotation by identification of local surface similarities: a novel tool for structural genomics
Background: Protein function is often dependent on subsets of solvent-exposed residues that may exist in a similar three-dimensional configuration in non homologous proteins thus ...
Fabrizio Ferrè, Gabriele Ausiello, Andreas ...
ACMMSP
2005
ACM
101views Hardware» more  ACMMSP 2005»
15 years 11 months ago
Transparent pointer compression for linked data structures
64-bit address spaces are increasingly important for modern applications, but they come at a price: pointers use twice as much memory, reducing the effective cache capacity and m...
Chris Lattner, Vikram S. Adve
BMCBI
2004
122views more  BMCBI 2004»
15 years 5 months ago
A comprehensive comparison of comparative RNA structure prediction approaches
Background: An increasing number of researchers have released novel RNA structure analysis and prediction algorithms for comparative approaches to structure prediction. Yet, indep...
Paul P. Gardner, Robert Giegerich
IS
2010
15 years 4 months ago
Extracting a largest redundancy-free XML storage structure from an acyclic hypergraph in polynomial time
Given a hypergraph and a set of embedded functional dependencies, we investigate the problem of determining the conditions under which we can efficiently generate redundancy-free ...
Wai Yin Mok, Joseph Fong, David W. Embley
BMCBI
2010
148views more  BMCBI 2010»
15 years 6 months ago
Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs
Background: Extensive and automated data integration in bioinformatics facilitates the construction of large, complex biological networks. However, the challenge lies in the inter...
Mara L. Hartsperger, Florian Blöchl, Volker S...