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BMCBI
2007
115views more  BMCBI 2007»
15 years 6 months ago
Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites
Background: We performed an exhaustive search for local structural similarities in an ensemble of non-redundant protein functional sites. With the purpose of finding new examples ...
Gabriele Ausiello, Daniele Peluso, Allegra Via, Ma...
PKDD
2010
Springer
235views Data Mining» more  PKDD 2010»
15 years 4 months ago
Online Structural Graph Clustering Using Frequent Subgraph Mining
The goal of graph clustering is to partition objects in a graph database into different clusters based on various criteria such as vertex connectivity, neighborhood similarity or t...
Madeleine Seeland, Tobias Girschick, Fabian Buchwa...
ICTAI
2009
IEEE
15 years 4 months ago
A Generalized Cyclic-Clustering Approach for Solving Structured CSPs
We propose a new method for solving structured CSPs which generalizes and improves the Cyclic-Clustering approach [4]. First, the cutset and the tree-decomposition of the constrai...
Cédric Pinto, Cyril Terrioux
SIAMMAX
2010
224views more  SIAMMAX 2010»
15 years 1 months ago
Robust Approximate Cholesky Factorization of Rank-Structured Symmetric Positive Definite Matrices
Abstract. Given a symmetric positive definite matrix A, we compute a structured approximate Cholesky factorization A RT R up to any desired accuracy, where R is an upper triangula...
Jianlin Xia, Ming Gu
NAR
2011
256views Computer Vision» more  NAR 2011»
14 years 9 months ago
ModBase, a database of annotated comparative protein structure models, and associated resources
ModBase (http://salilab.org/modbase) is a database of annotated comparative protein structure models. The models are calculated by ModPipe, an automated modeling pipeline that rel...
Ursula Pieper, Benjamin M. Webb, David T. Barkan, ...