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ISMB
1996
15 years 8 months ago
A Knowledge-Based Method for Protein Structure Refinement and Prediction
The native conformation of a protein, in a given environment, is determined entirely by the various interatomic interactions dictated by the amino acid sequence (1-3). We describe...
Shankar Subramaniam, David K. Tcheng, James M. Fen...
ISBRA
2007
Springer
16 years 25 days ago
Reconstruction of 3D Structures from Protein Contact Maps
Proteins are large organic compounds made of amino acids arranged in a linear chain (primary structure). Most proteins fold into unique threedimensional (3D) structures called inte...
Marco Vassura, Luciano Margara, Filippo Medri, Pie...
BIOINFORMATICS
2011
15 years 1 months ago
All-atom knowledge-based potential for RNA structure prediction and assessment
Motivation: Over the recent years, the vision that RNA simply serves as information transfer molecule has dramatically changed. The study of the sequence/structure/function relati...
Emidio Capriotti, Tomás Norambuena, Marc A....
WALCOM
2010
IEEE
230views Algorithms» more  WALCOM 2010»
16 years 1 months ago
Comparing RNA Structures with Biologically Relevant Operations Cannot Be Done without Strong Combinatorial Restrictions
Abstract. Arc-annotated sequences are useful for representing structural information of RNAs and have been extensively used for comparing RNA structures in both terms of sequence a...
Guillaume Blin, Sylvie Hamel, Stéphane Vial...
CW
2005
IEEE
16 years 9 days ago
Applying Transformation-Based Error-Driven Learning to Structured Natural Language Queries
XML information retrieval (XML-IR) systems aim to provide users with highly exhaustive and highly specific results. To interact with XML-IR systems, users must express both their ...
Alan Woodley, Shlomo Geva