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» Invariant features for searching in protein fold databases
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LBM
2007
15 years 7 months ago
Syntactic Features for Protein-Protein Interaction Extraction
Background: Extracting Protein-Protein Interactions (PPI) from research papers is a way of translating information from English to the language used by the databases that store th...
Rune Sætre, Kenji Sagae, Jun-ichi Tsujii
BIOCOMP
2008
15 years 7 months ago
Analysis of Protein-Ligand Interactions Using Localized Stereochemical Features
Computational analyses of protein structure-function relationships have traditionally been based on sequence homology, fold family analysis and 3D motifs/templates. Previous struct...
Reetal Pai, James C. Sacchettini, Thomas R. Ioerge...
BMCBI
2005
97views more  BMCBI 2005»
15 years 5 months ago
Comparative mapping of sequence-based and structure-based protein domains
Background: Protein domains have long been an ill-defined concept in biology. They are generally described as autonomous folding units with evolutionary and functional independenc...
Ya Zhang, John-Marc Chandonia, Chris H. Q. Ding, S...
DEXAW
2006
IEEE
130views Database» more  DEXAW 2006»
16 years 1 days ago
Exploiting Geometrical Properties on Protein Similarity Search
This paper discusses about several combinations of protein similarity measurement-methods, with respect to normalization, spatial partitions, geometrical properties, and distance ...
Saiful Akbar, Josef Küng, Roland Wagner
3DPVT
2002
IEEE
121views Visualization» more  3DPVT 2002»
15 years 11 months ago
Analysis of Secondary Structure Elements of Proteins Using Indexing Techniques
In this paper we present a method for protein structure comparison that is based on indexing. Unlike most methods using indexing, ours does not use invariants of the C atoms of th...
Concettina Guerra, Stefano Lonardi, Giuseppe Zanot...