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BMCBI
2010
147views more  BMCBI 2010»
15 years 6 months ago
Learning biological network using mutual information and conditional independence
Background: Biological networks offer us a new way to investigate the interactions among different components and address the biological system as a whole. In this paper, a revers...
Dong-Chul Kim, Xiaoyu Wang, Chin-Rang Yang, Jean G...
BMCBI
2007
109views more  BMCBI 2007»
15 years 6 months ago
TABASCO: A single molecule, base-pair resolved gene expression simulator
Background: Experimental studies of gene expression have identified some of the individual molecular components and elementary reactions that comprise and control cellular behavio...
Sriram Kosuri, Jason R. Kelly, Drew Endy
BMCBI
2008
130views more  BMCBI 2008»
15 years 6 months ago
Structural descriptor database: a new tool for sequence-based functional site prediction
Background: The Structural Descriptor Database (SDDB) is a web-based tool that predicts the function of proteins and functional site positions based on the structural properties o...
Juliana S. Bernardes, Jorge H. Fernandez, Ana Tere...
BMCBI
2008
118views more  BMCBI 2008»
15 years 6 months ago
Virtual screening of GPCRs: An in silico chemogenomics approach
The G-protein coupled receptor (GPCR) superfamily is currently the largest class of therapeutic targets. In silico prediction of interactions between GPCRs and small molecules is ...
Laurent Jacob, Brice Hoffmann, Véronique St...
ENTCS
2008
91views more  ENTCS 2008»
15 years 6 months ago
Expressing Priorities and External Probabilities in Process Algebra via Mixed Open/Closed Systems
Defining operational semantics for a process algebra is often based either on labeled transition systems that account for interaction with a context or on the so-called reduction ...
Mario Bravetti
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