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CSR
2006
Springer
15 years 10 months ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
EVOW
2008
Springer
15 years 8 months ago
Divide, Align and Full-Search for Discovering Conserved Protein Complexes
Advances in modern technologies for measuring protein-protein interaction (PPI) has boosted research in PPI networks analysis and comparison. One of the challenging problems in com...
Pavol Jancura, Jaap Heringa, Elena Marchiori
BMCBI
2004
98views more  BMCBI 2004»
15 years 6 months ago
STING Millennium Suite: integrated software for extensive analyses of 3d structures of proteins and their complexes
Background: The integration of many aspects of protein/DNA structure analysis is an important requirement for software products in general area of structural bioinformatics. In fa...
Roberto H. Higa, Roberto C. Togawa, Arnaldo J. Mon...
HPDC
2005
IEEE
15 years 12 months ago
Recording and using provenance in a protein compressibility experiment
Very large scale computations are now becoming routinely used as a methodology to undertake scientific research. In this context, ‘provenance systems’ are regarded as the equ...
Paul T. Groth, Simon Miles, Weijian Fang, Sylvia C...
BMCBI
2010
98views more  BMCBI 2010»
15 years 6 months ago
An optimized TOPS+ comparison method for enhanced TOPS models
nd: Although methods based on highly abstract descriptions of protein structures, such as VAST and TOPS, can perform very fast protein structure comparison, the results can lack a...
Mallika Veeramalai, David Gilbert, Gabriel Valient...