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BMCBI
2007
133views more  BMCBI 2007»
15 years 6 months ago
MATLIGN: a motif clustering, comparison and matching tool
Background: Sequence motifs representing transcription factor binding sites (TFBS) are commonly encoded as position frequency matrices (PFM) or degenerate consensus sequences (CS)...
Matti Kankainen, Ari Löytynoja
BMCBI
2005
124views more  BMCBI 2005»
15 years 6 months ago
ErmineJ: Tool for functional analysis of gene expression data sets
Background: It is common for the results of a microarray study to be analyzed in the context of biologically-motivated groups of genes such as pathways or Gene Ontology categories...
Homin K. Lee, William Braynen, Kiran Keshav, Paul ...
ECLIPSE
2007
ACM
15 years 10 months ago
High velocity refactorings in Eclipse
In Eclipse, and in most other development environments, refactorings are activated by selecting code, then using a menu or hotkey, and finally engaging in a dialog with a "wi...
Emerson R. Murphy-Hill, Andrew P. Black
FPGA
2005
ACM
215views FPGA» more  FPGA 2005»
15 years 12 months ago
Design, layout and verification of an FPGA using automated tools
Creating a new FPGA is a challenging undertaking because of the significant effort that must be spent on circuit design, layout and verification. It currently takes approximately ...
Ian Kuon, Aaron Egier, Jonathan Rose
ECOOP
2003
Springer
15 years 11 months ago
LeakBot: An Automated and Lightweight Tool for Diagnosing Memory Leaks in Large Java Applications
Despite Java’s automatic reclamation of memory, memory leaks remain an important problem. For example, we frequently encounter memory leaks that cause production servers to crash...
Nick Mitchell, Gary Sevitsky