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BMCBI
2010
109views more  BMCBI 2010»
15 years 6 months ago
FPGA acceleration of the phylogenetic likelihood function for Bayesian MCMC inference methods
Background: Likelihood (ML)-based phylogenetic inference has become a popular method for estimating the evolutionary relationships among species based on genomic sequence data. Th...
Stephanie Zierke, Jason D. Bakos
BMCBI
2010
95views more  BMCBI 2010»
15 years 6 months ago
Heuristics for the inversion median problem
Background: The study of genome rearrangements has become a mainstay of phylogenetics and comparative genomics. Fundamental in such a study is the median problem: given three geno...
Vaibhav Rajan, Andrew Wei Xu, Yu Lin, Krister M. S...
CCR
2010
156views more  CCR 2010»
15 years 6 months ago
Evolvable network architectures: what can we learn from biology?
There is significant research interest recently to understand the evolution of the current Internet, as well as to design clean-slate Future Internet architectures. Clearly, even ...
Constantine Dovrolis, J. Todd Streelman
COR
2010
150views more  COR 2010»
15 years 6 months ago
Black box scatter search for general classes of binary optimization problems
The purpose of this paper is to apply the scatter search methodology to general classes of binary problems. We focus on optimization problems for which the solutions are represent...
Francisco Gortázar, Abraham Duarte, Manuel ...
CORR
2008
Springer
90views Education» more  CORR 2008»
15 years 6 months ago
A Pseudo-Boolean Solution to the Maximum Quartet Consistency Problem
Determining the evolutionary history of a given biological data is an important task in biological sciences. Given a set of quartet topologies over a set of taxa, the Maximum Quart...
António Morgado, João P. Marques Sil...