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SPIN
2000
Springer
15 years 10 months ago
Symmetric Spin
Abstract. We give a detailed description of SymmSpin, a symmetryreduction package for Spin. It o ers four strategies for state-space reduction, based on the heuristic that we prese...
Dragan Bosnacki, Dennis Dams, Leszek Holenderski
BMCBI
2005
132views more  BMCBI 2005»
15 years 6 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
CORR
2010
Springer
44views Education» more  CORR 2010»
15 years 4 months ago
Maximum union-free subfamilies
An old problem of Moser asks: how large of a union-free subfamily does every family of m sets have? A family of sets is called union-free if there are no three distinct sets in th...
Jacob Fox, Choongbum Lee, Benny Sudakov
ALMOB
2006
106views more  ALMOB 2006»
15 years 6 months ago
Multiple sequence alignment with user-defined anchor points
Background: Automated software tools for multiple alignment often fail to produce biologically meaningful results. In such situations, expert knowledge can help to improve the qua...
Burkhard Morgenstern, Sonja J. Prohaska, Dirk P&ou...
BMCBI
2007
135views more  BMCBI 2007»
15 years 6 months ago
Automatic extraction of reliable regions from multiple sequence alignments
Background: High quality multiple alignments are crucial in the transfer of annotation from one genome to another. Multiple alignment methods strive to achieve ever increasing lev...
Timo Lassmann, Erik L. L. Sonnhammer