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BMCBI
2010
154views more  BMCBI 2010»
15 years 6 months ago
An algorithm for automated closure during assembly
Background: Finishing is the process of improving the quality and utility of draft genome sequences generated by shotgun sequencing and computational assembly. Finishing can invol...
Sergey Koren, Jason R. Miller, Brian Walenz, Grang...
SPAA
2003
ACM
15 years 12 months ago
A practical algorithm for constructing oblivious routing schemes
In a (randomized) oblivious routing scheme the path chosen for a request between a source s and a target t is independent from the current traffic in the network. Hence, such a sc...
Marcin Bienkowski, Miroslaw Korzeniowski, Harald R...
FCCM
2006
IEEE
113views VLSI» more  FCCM 2006»
16 years 22 days ago
GraphStep: A System Architecture for Sparse-Graph Algorithms
— Many important applications are organized around long-lived, irregular sparse graphs (e.g., data and knowledge bases, CAD optimization, numerical problems, simulations). The gr...
Michael DeLorimier, Nachiket Kapre, Nikil Mehta, D...
188
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GECCO
2003
Springer
189views Optimization» more  GECCO 2003»
15 years 12 months ago
A Forest Representation for Evolutionary Algorithms Applied to Network Design
Abstract. Network design involves several areas of engineering and science. Computer networks, electrical circuits, transportation problems, and phylogenetic trees are some example...
Alexandre C. B. Delbem, André Carlos Ponce ...
BMCBI
2008
123views more  BMCBI 2008»
15 years 6 months ago
PocketMatch: A new algorithm to compare binding sites in protein structures
Background: Recognizing similarities and deriving relationships among protein molecules is a fundamental requirement in present-day biology. Similarities can be present at various...
Kalidas Yeturu, Nagasuma Chandra