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BMCBI
2007
100views more  BMCBI 2007»
15 years 7 months ago
SBMLeditor: effective creation of models in the Systems Biology Markup Language (SBML)
Background: The need to build a tool to facilitate the quick creation and editing of models encoded in the Systems Biology Markup language (SBML) has been growing with the number ...
Nicolas Rodriguez, Marco Donizelli, Nicolas Le Nov...
BMCBI
2008
125views more  BMCBI 2008»
15 years 7 months ago
SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes
Background: It has been repeatedly observed that gene order is rapidly lost in prokaryotic genomes. However, persistent synteny blocks are found when comparing more or less distan...
Frédéric Lemoine, Bernard Labedan, O...
JCC
2007
121views more  JCC 2007»
15 years 6 months ago
Speeding up parallel GROMACS on high-latency networks
: We investigate the parallel scaling of the GROMACS molecular dynamics code on Ethernet Beowulf clusters and what prerequisites are necessary for decent scaling even on such clust...
Carsten Kutzner, David van der Spoel, Martin Fechn...
LOGCOM
1998
80views more  LOGCOM 1998»
15 years 6 months ago
Occurrences and Narratives as Constraints in the Branching Structure of the Situation Calculus
The Situation Calculus is a logic of time and change in which there is a distinguished initial situation ¡£¢ and all other situations arise from the different sequences of acti...
Javier Pinto
SAC
2002
ACM
15 years 6 months ago
Concurrency control for distributed cooperative engineering applications
Distributed cooperative engineering applications require consistent and long-term sharing of large volumes of data, which may cause conflicts due to concurrent read/write operatio...
João Coelho Garcia, Paulo Ferreira