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BMCBI
2007
127views more  BMCBI 2007»
15 years 6 months ago
The EIPeptiDi tool: enhancing peptide discovery in ICAT-based LC MS/MS experiments
Background: Isotope-coded affinity tags (ICAT) is a method for quantitative proteomics based on differential isotopic labeling, sample digestion and mass spectrometry (MS). The me...
Mario Cannataro, Giovanni Cuda, Marco Gaspari, Ser...
BIOINFORMATICS
2005
72views more  BIOINFORMATICS 2005»
15 years 6 months ago
Use of within-array replicate spots for assessing differential expression in microarray experiments
Motivation. Spotted arrays are often printed with probes in duplicate or triplicate, but current methods for assessing differential expression are not able to make full use of the...
Gordon K. Smyth, Joëlle Michaud, Hamish S. Sc...
CEC
2010
IEEE
15 years 4 months ago
Beating the 'world champion' evolutionary algorithm via REVAC tuning
Abstract-- We present a case study demonstrating that using the REVAC parameter tuning method we can greatly improve the `world champion' EA (the winner of the CEC2005 competi...
Selmar K. Smit, A. E. Eiben
BMCBI
2011
14 years 10 months ago
PeakRanger: A cloud-enabled peak caller for ChIP-seq data
Background: Chromatin immunoprecipitation (ChIP), coupled with massively parallel short-read sequencing (seq) is used to probe chromatin dynamics. Although there are many algorith...
Xin Feng, Robert Grossman, Lincoln Stein
EUROSYS
2007
ACM
16 years 3 months ago
Adaptive control of virtualized resources in utility computing environments
Data centers are often under-utilized due to over-provisioning as well as time-varying resource demands of typical enterprise applications. One approach to increase resource utili...
Pradeep Padala, Kang G. Shin, Xiaoyun Zhu, Mustafa...
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