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IPPS
2008
IEEE
16 years 1 months ago
Supporting high performance bioinformatics flat-file data processing using indices
As an essential part of in vitro analysis, biological database query has become more and more important in the research process. A few challenges that are specific to bioinformat...
Xuan Zhang, Gagan Agrawal
LICS
2008
IEEE
16 years 1 months ago
Focusing on Binding and Computation
Variable binding is a prevalent feature of the syntax and proof theory of many logical systems. In this paper, we define a programming language that provides intrinsic support fo...
Daniel R. Licata, Noam Zeilberger, Robert Harper
PDP
2008
IEEE
16 years 1 months ago
Type Safe Algorithmic Skeletons
This paper addresses the issue of type safe algorithmic skeletons. From a theoretical perspective we contribute by: formally specifying a type system for algorithmic skeletons, an...
Denis Caromel, Ludovic Henrio, Mario Leyton
BIBE
2007
IEEE
150views Bioinformatics» more  BIBE 2007»
16 years 1 months ago
Differential Scoring for Systolic Sequence Alignment
Systolic implementations of dynamic programming solutions that utilize a similarity matrix can achieve appreciable performance with both course- and fine-grain parallelization. A ...
Antonio E. de la Serna
FCCM
2007
IEEE
146views VLSI» more  FCCM 2007»
16 years 1 months ago
Mitrion-C Application Development on SGI Altix 350/RC100
This paper provides an evaluation of SGI® RASC™ RC100 technology from a computational science software developer’s perspective. A brute force implementation of a two-point an...
Volodymyr V. Kindratenko, Robert J. Brunner, Adam ...