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CSB
2003
IEEE
15 years 12 months ago
A New Approach for Gene Annotation Using Unambiguous Sequence Joining
The problem addressed by this paper is accurate and automatic gene annotation following precise identification/annotation of exon and intron boundaries of biologically verified ...
Alexandre Tchourbanov, Daniel Quest, Hesham H. Ali...
ICPP
2003
IEEE
15 years 12 months ago
FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment
Pairwise sequence alignment is a fundamental operation for homology search in bioinformatics. For two DNA or protein sequences of length ¢ and £ , full-matrix (FM), dynamic prog...
Adrian Driga, Paul Lu, Jonathan Schaeffer, Duane S...
PPOPP
2003
ACM
15 years 12 months ago
Exploiting high-level coherence information to optimize distributed shared state
InterWeave is a distributed middleware system that supports the sharing of strongly typed, pointer-rich data structures across a wide variety of hardware architectures, operating ...
DeQing Chen, Chunqiang Tang, Brandon Sanders, Sand...
SC
2003
ACM
15 years 12 months ago
A Compiler Analysis of Interprocedural Data Communication
This paper presents a compiler analysis for data communication for the purpose of transforming ordinary programs into ones that run on distributed systems. Such transformations ha...
Yonghua Ding, Zhiyuan Li
AGTIVE
2003
Springer
15 years 12 months ago
Local Specification of Surface Subdivision Algorithms
Many polygon mesh algorithms operate in a local manner, yet are formally specified using global indexing schemes. This obscures the essence of these algorithms and makes their spe...
Colin Smith, Przemyslaw Prusinkiewicz, Faramarz F....